About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54371PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides54372-
Paelopatides54373HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54374CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54375CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54376NUCLEAR RESPIRATORY FACTOR 1
Paelopatides543772-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
Paelopatides54378FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides54387ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Paelopatides54390-
Paelopatides54391BUCENTAUR RELATED
Paelopatides54392ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides54393MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
Paelopatides54394LEUCOKININ RECEPTOR-RELATED
Paelopatides54395CULLIN
Paelopatides54396TROPOMODULIN
Paelopatides54397ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides54398COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides54399CXXC-TYPE ZINC FINGER PROTEIN 1
Paelopatides54400-
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