About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54484PROTEIN CBG26694
Paelopatides54486FATTY ACID ACYL TRANSFERASE-RELATED
Paelopatides54487-
Paelopatides54490HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H
Paelopatides54491SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides54492SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides54493REVERSE TRANSCRIPTASES
Paelopatides54494CENTROSOMAL PROTEIN 2
Paelopatides54495TRNA DIMETHYLALLYLTRANSFERASE
Paelopatides54496DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4
Paelopatides54497RAS-LIKE FAMILY MEMBER 11
Paelopatides54498METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides54499METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides54500ANKYRIN REPEAT FAMILY PROTEIN
Paelopatides54503L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides54504ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54505-
Paelopatides54506-
Paelopatides54507DOUBLECORTIN DOMAIN CONTAINING 2
Paelopatides54508SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
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