About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54614PROTEIN CBG26694
Paelopatides54615PROTEIN CBG26694
Paelopatides54616KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Paelopatides54617ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54618-
Paelopatides54619-
Paelopatides54620TUBULIN
Paelopatides54621BTB DOMAIN-CONTAINING PROTEIN
Paelopatides54622-
Paelopatides54623HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides54624COFILIN-RELATED
Paelopatides54625GH12955P
Paelopatides54626-
Paelopatides54627BREAST CANCER METASTASIS-SUPPRESSOR 1
Paelopatides54628B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides54629GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides54630HEDGEHOG
Paelopatides54631NADPH OXIDASE
Paelopatides54632MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1
Paelopatides54633-
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