About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54571S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE
Paelopatides54572S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE
Paelopatides54573-
Paelopatides54574ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54575-
Paelopatides54576EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
Paelopatides54577EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3
Paelopatides54580POLYCYSTIN FAMILY MEMBER
Paelopatides54581NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides54582MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides54583MONOCARBOXYLATE TRANSPORTER
Paelopatides54584REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54586ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54587ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54588ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED
Paelopatides54589SREK1IP1 FAMILY MEMBER
Paelopatides54590HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54591HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54592RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides54593UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
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