About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54634GAMMA TUBULIN COMPLEX PROTEIN
Paelopatides54635GAMMA TUBULIN COMPLEX PROTEIN
Paelopatides54636LEUCINE RICH REPEAT PROTEIN
Paelopatides54637PHOSPHOMEVALONATE KINASE
Paelopatides54638-
Paelopatides54639ALPHA- AND GAMMA-ADAPTIN-BINDING PROTEIN P34
Paelopatides54640CCCH ZINC FINGER/TIS11-RELATED
Paelopatides54641BONUS, ISOFORM C-RELATED
Paelopatides54642RNA BINDING PROTEIN
Paelopatides54643PROTEIN CBG26694
Paelopatides54645REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides54646-
Paelopatides54647-
Paelopatides54648NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides54649RETROTRANSPOSON
Paelopatides54650PLEXIN
Paelopatides54651PLEXIN
Paelopatides54652ENDONUCLEASE-RELATED
Paelopatides54653ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54654-
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