About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides54594DYNEIN INTERMEDIATE CHAIN
Paelopatides54595ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54596ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54597PROTEIN CBG26694
Paelopatides54598-
Paelopatides54599-
Paelopatides54600-
Paelopatides54601PROTEIN CBG26694
Paelopatides54602PROTEIN CBG26694
Paelopatides54603POL PROTEIN
Paelopatides54604-
Paelopatides54605G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides54606ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54607ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides54608HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides54609RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Paelopatides54610GAG-RELATED PROTEIN
Paelopatides54611REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides54612RING ZINC FINGER
Paelopatides54613EXPORTIN 1/5
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