Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_012840-T1 | ZINC FINGER PROTEIN |
LLU|FUN_012841-T1 | |
LLU|FUN_012842-T1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
LLU|FUN_012843-T1 | |
LLU|FUN_012844-T1 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_012845-T1 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
LLU|FUN_012846-T1 | - |
LLU|FUN_012847-T1 | |
LLU|FUN_012848-T1 | |
LLU|FUN_012849-T1 | YIPPEE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_012850-T1 | |
LLU|FUN_012851-T1 | |
LLU|FUN_012852-T1 | |
LLU|FUN_012853-T1 | |
LLU|FUN_012854-T1 | |
LLU|FUN_012855-T1 | |
LLU|FUN_012856-T1 | |
LLU|FUN_012857-T1 | |
LLU|FUN_012858-T1 | |
LLU|FUN_012859-T1 | |
LLU|FUN_012860-T1 | COLLAGEN ALPHA |
LLU|FUN_012861-T1 | DENTIN SIALOPHOSPHOPROTEIN |
LLU|FUN_012862-T1 | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH |
LLU|FUN_012863-T1 | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH |
LLU|FUN_012864-T1 | |
LLU|FUN_012865-T1 | FRIZZLED |
LLU|FUN_012866-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
LLU|FUN_012867-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
LLU|FUN_012868-T1 | |
LLU|FUN_012869-T1 | |
LLU|FUN_012870-T1 | INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN |
LLU|FUN_012871-T1 | ARMADILLO REPEAT CONTAINING PROTEIN |
LLU|FUN_012872-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S25 |
LLU|FUN_012873-T1 | FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED |
LLU|FUN_012874-T1 | COPINE |
LLU|FUN_012875-T1 | |
LLU|FUN_012876-T1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
LLU|FUN_012877-T1 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
LLU|FUN_012878-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_012879-T1 | HEMK METHYLTRANSFERASE |
LLU|FUN_012880-T1 | HIGH MOBILITY GROUP PROTEINS HMG-A AND C |
LLU|FUN_012881-T1 | |
LLU|FUN_012882-T1 | |
LLU|FUN_012883-T1 | |
LLU|FUN_012884-T1 | PROGRAMMED CELL DEATH PROTEIN 7 |
LLU|FUN_012885-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
LLU|FUN_012886-T1 | IMPORTIN-7, 8, 11 |
LLU|FUN_012887-T1 | |
LLU|FUN_012888-T1 | |
LLU|FUN_012889-T1 |