Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_012637-T1 | |
LLU|FUN_012638-T1 | |
LLU|FUN_012639-T1 | EPPIN |
LLU|FUN_012640-T1 | |
LLU|FUN_012641-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_012642-T1 | VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE |
LLU|FUN_012643-T1 | UNCHARACTERIZED |
LLU|FUN_012644-T1 | ATAXIN 2-BINDING PROTEIN 1-RELATED |
LLU|FUN_012645-T1 | |
LLU|FUN_012646-T1 | ENOYL-COA HYDRATASE-RELATED |
LLU|FUN_012647-T1 | |
LLU|FUN_012648-T1 | |
LLU|FUN_012649-T1 | |
LLU|FUN_012650-T1 | STEREOCILIN RELATED |
LLU|FUN_012651-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_012652-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_012653-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_012654-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_012655-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_012656-T1 | |
LLU|FUN_012657-T1 | |
LLU|FUN_012658-T1 | UNCHARACTERIZED |
LLU|FUN_012659-T1 | AMINO ACID TRANSPORTER |
LLU|FUN_012660-T1 | MITOCHONDRIAL GLYCINE TRANSPORTER |
LLU|FUN_012661-T1 | UNC-93 RELATED |
LLU|FUN_012662-T1 | UNC-93 RELATED |
LLU|FUN_012663-T1 | CYCLIN |
LLU|FUN_012664-T1 | |
LLU|FUN_012665-T1 | |
LLU|FUN_012666-T1 | |
LLU|FUN_012667-T1 | |
LLU|FUN_012668-T1 | ACTIN |
LLU|FUN_012669-T1 | H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 |
LLU|FUN_012670-T1 | GERM CELL-LESS PROTEIN |
LLU|FUN_012671-T1 | SPHINGOMYELIN SYNTHETASE |
LLU|FUN_012672-T1 | VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL |
LLU|FUN_012673-T1 | FROUNT PROTEIN-RELATED |
LLU|FUN_012674-T1 | IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED |
LLU|FUN_012675-T1 | ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN |
LLU|FUN_012676-T1 | CENTROMERE PROTEIN M |
LLU|FUN_012677-T1 | COILIN P80 |
LLU|FUN_012678-T1 | HOMEOBOX PROTEIN ARISTALESS |
LLU|FUN_012679-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
LLU|FUN_012680-T1 | 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE |
LLU|FUN_012681-T1 | |
LLU|FUN_012682-T1 | |
LLU|FUN_012683-T1 | |
LLU|FUN_012684-T1 | |
LLU|FUN_012685-T1 | BLR2807 PROTEIN |
LLU|FUN_012686-T1 |