About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_012637-T1
LLU|FUN_012638-T1
LLU|FUN_012639-T1EPPIN
LLU|FUN_012640-T1
LLU|FUN_012641-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_012642-T1VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE
LLU|FUN_012643-T1UNCHARACTERIZED
LLU|FUN_012644-T1ATAXIN 2-BINDING PROTEIN 1-RELATED
LLU|FUN_012645-T1
LLU|FUN_012646-T1ENOYL-COA HYDRATASE-RELATED
LLU|FUN_012647-T1
LLU|FUN_012648-T1
LLU|FUN_012649-T1
LLU|FUN_012650-T1STEREOCILIN RELATED
LLU|FUN_012651-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_012652-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_012653-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_012654-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_012655-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_012656-T1
LLU|FUN_012657-T1
LLU|FUN_012658-T1UNCHARACTERIZED
LLU|FUN_012659-T1AMINO ACID TRANSPORTER
LLU|FUN_012660-T1MITOCHONDRIAL GLYCINE TRANSPORTER
LLU|FUN_012661-T1UNC-93 RELATED
LLU|FUN_012662-T1UNC-93 RELATED
LLU|FUN_012663-T1CYCLIN
LLU|FUN_012664-T1
LLU|FUN_012665-T1
LLU|FUN_012666-T1
LLU|FUN_012667-T1
LLU|FUN_012668-T1ACTIN
LLU|FUN_012669-T1H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1
LLU|FUN_012670-T1GERM CELL-LESS PROTEIN
LLU|FUN_012671-T1SPHINGOMYELIN SYNTHETASE
LLU|FUN_012672-T1VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL
LLU|FUN_012673-T1FROUNT PROTEIN-RELATED
LLU|FUN_012674-T1IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED
LLU|FUN_012675-T1ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN
LLU|FUN_012676-T1CENTROMERE PROTEIN M
LLU|FUN_012677-T1COILIN P80
LLU|FUN_012678-T1HOMEOBOX PROTEIN ARISTALESS
LLU|FUN_012679-T1CALCIUM HOMEOSTASIS MODULATOR PROTEIN
LLU|FUN_012680-T17,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE
LLU|FUN_012681-T1
LLU|FUN_012682-T1
LLU|FUN_012683-T1
LLU|FUN_012684-T1
LLU|FUN_012685-T1BLR2807 PROTEIN
LLU|FUN_012686-T1
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