Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_012940-T1 | |
LLU|FUN_012941-T1 | 2-AMINOETHYLPHOSPHONATE--PYRUVATE TRANSAMINASE |
LLU|FUN_012942-T1 | |
LLU|FUN_012943-T1 | CLASPIN |
LLU|FUN_012944-T1 | |
LLU|FUN_012945-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_012946-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_012947-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_012948-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_012949-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_012950-T1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
LLU|FUN_012951-T1 | |
LLU|FUN_012952-T1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_012953-T1 | DEOXYRIBONUCLEASE |
LLU|FUN_012954-T1 | DEOXYRIBONUCLEASE |
LLU|FUN_012955-T1 | |
LLU|FUN_012956-T1 | |
LLU|FUN_012957-T1 | |
LLU|FUN_012958-T1 | |
LLU|FUN_012959-T1 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL |
LLU|FUN_012960-T1 | |
LLU|FUN_012961-T1 | |
LLU|FUN_012962-T1 | |
LLU|FUN_012963-T1 | |
LLU|FUN_012964-T1 | PROTEASOME SUBUNIT ALPHA/BETA |
LLU|FUN_012965-T1 | |
LLU|FUN_012966-T1 | |
LLU|FUN_012967-T1 | FAD SYNTHETASE-RELATED FMN ADENYLYLTRANSFERASE |
LLU|FUN_012968-T1 | UNCHARACTERIZED PROTEIN KIAA2013 |
LLU|FUN_012969-T1 | NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1 |
LLU|FUN_012970-T1 | PEROXISOMAL MEMBRANE PROTEIN 4 |
LLU|FUN_012971-T1 | |
LLU|FUN_012972-T1 | |
LLU|FUN_012973-T1 | |
LLU|FUN_012974-T1 | |
LLU|FUN_012975-T1 | FRIZZLED |
LLU|FUN_012976-T1 | |
LLU|FUN_012977-T1 | |
LLU|FUN_012978-T1 | |
LLU|FUN_012979-T1 | |
LLU|FUN_012980-T1 | |
LLU|FUN_012981-T1 | |
LLU|FUN_012982-T1 | HEMOGLOBINASE FAMILY MEMBER |
LLU|FUN_012983-T1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
LLU|FUN_012984-T1 | |
LLU|FUN_012985-T1 | |
LLU|FUN_012992-T1 | 30S RIBOSOMAL PROTEIN S1 |
LLU|FUN_012993-T1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED |
LLU|FUN_012994-T1 | RIBOSOMAL PROTEIN S6 KINASE |
LLU|FUN_012995-T1 | CENTROSOMAL PROTEIN OF 128 KDA |