About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05242TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11
Paelopatides05243FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides05244-
Paelopatides05245-
Paelopatides05246VITELLOGENIN-RELATED
Paelopatides05247EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
Paelopatides05248REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05249REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05250ENDONUCLEASE-RELATED
Paelopatides05251L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))
Paelopatides05252L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))
Paelopatides05253ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides05254-
Paelopatides05255-
Paelopatides05256ENZYMATIC POLYPROTEIN-RELATED
Paelopatides05257ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides05258REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05259REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05260-
Paelopatides05261-
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