About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05177TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides05178-
Paelopatides05179PROTEIN, PUTATIVE-RELATED
Paelopatides05180PROTEIN, PUTATIVE-RELATED
Paelopatides05181-
Paelopatides05182ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05183MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
Paelopatides05184REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05185PROTEIN CBG26694
Paelopatides05186LIPOXYGENASE
Paelopatides05187L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides05189CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides05190AMINO ACID TRANSPORTER
Paelopatides05191AMINO ACID TRANSPORTER
Paelopatides05193-
Paelopatides05194-
Paelopatides05195-
Paelopatides05196POL PROTEIN
Paelopatides05197-
Paelopatides05198REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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