About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05052-
Paelopatides0505352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides05054-
Paelopatides05055-
Paelopatides05056REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05057WD-40 REPEAT PROTEIN
Paelopatides05058-
Paelopatides05059WD-40 REPEAT PROTEIN
Paelopatides05060BUCENTAUR RELATED
Paelopatides05061ENDONUCLEASE-RELATED
Paelopatides05062PROTEIN CBG26694
Paelopatides05063PARANEOPLASTIC ANTIGEN
Paelopatides05064REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05065PHD FINGER TRANSCRIPTION FACTOR
Paelopatides05066PHD FINGER TRANSCRIPTION FACTOR
Paelopatides05067PROTEIN CBG26694
Paelopatides05068TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides05069-
Paelopatides05070ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05071OLIGORIBONUCLEASE, MITOCHONDRIAL
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