About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04951-
Paelopatides04952SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides04953CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides04954NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides0495552 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides04956-
Paelopatides04957SWIM-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides04958-
Paelopatides04959CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
Paelopatides04960-
Paelopatides04961DNA POLYMERASE
Paelopatides04962-
Paelopatides04963INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Paelopatides04964-
Paelopatides04965FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04966-
Paelopatides04967-
Paelopatides04968ENDONUCLEASE
Paelopatides04969-
Paelopatides04970REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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