About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04888RETROTRANSPOSON
Paelopatides04889PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides04890DNA LIGASE
Paelopatides04891-
Paelopatides04893PROTEIN O-MANNOSYL-TRANSFERASE TMTC2
Paelopatides04894TRANSMEMBRANE PROTEIN 246
Paelopatides04895-
Paelopatides04896THIOREDOXIN-LIKE PROTEN 4A, 4B
Paelopatides04897NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED
Paelopatides04898REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04899-
Paelopatides04900LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides04901-
Paelopatides04902LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides04903-
Paelopatides04904-
Paelopatides04905-
Paelopatides04906ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides04908WASH COMPLEX SUBUNIT 4
Paelopatides04909WASH COMPLEX SUBUNIT 4
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