About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04827PROTEIN CBG26694
Paelopatides04828-
Paelopatides04829-
Paelopatides04830-
Paelopatides04831MRNA GUANINE-7- METHYLTRANSFERASE
Paelopatides04832-
Paelopatides04833FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04834MEDIATOR COMPLEX SUBUNIT
Paelopatides04835MEDIATOR COMPLEX SUBUNIT
Paelopatides04836FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04837REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04838CYTOCHROME B561-RELATED
Paelopatides04839ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04840INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Paelopatides04841METHIONINE AMINOPEPTIDASE 2
Paelopatides04842CYSTEINE PROTEASE FAMILY C1-RELATED
Paelopatides04843-
Paelopatides04844-
Paelopatides04845PYRUVATE DEHYDROGENASE KINASE
Paelopatides04846EPM2A-INTERACTING PROTEIN 1
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