About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides0472650S RIBOSOMAL PROTEIN L9
Paelopatides04727-
Paelopatides04728PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
Paelopatides04729BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1
Paelopatides04730-
Paelopatides04731ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04732SACSIN
Paelopatides04733SACSIN
Paelopatides04734ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides04735ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides04736ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04737E3 UBIQUITIN-PROTEIN LIGASE MIB2
Paelopatides04738PROTEIN CBG26694
Paelopatides04739RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides04740SERINE HYDROXYMETHYLTRANSFERASE
Paelopatides04741-
Paelopatides04742GAG-RELATED PROTEIN
Paelopatides04743-
Paelopatides04744NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides04745MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
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