About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04596-
Paelopatides04598PROPERDIN
Paelopatides04599NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1
Paelopatides04600NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1
Paelopatides04601HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides04602-
Paelopatides04603FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04604FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04606LIPASE
Paelopatides04607-
Paelopatides04608MULTICOPPER OXIDASE-RELATED
Paelopatides04609RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
Paelopatides04610RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
Paelopatides04611FI04643P-RELATED
Paelopatides04612DIPHOSPHOMEVALONATE DECARBOXYLASE
Paelopatides04613PROTEIN ARGININE N-METHYLTRANSFERASE
Paelopatides04614FANCONI ANEMIA GROUP A PROTEIN
Paelopatides04615PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Paelopatides04616POL PROTEIN
Paelopatides04617REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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