About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04472NUCLEAR HORMONE RECEPTOR
Paelopatides04473SYNAPTONEMAL COMPLEX PROTEIN-RELATED
Paelopatides04474-
Paelopatides04475-
Paelopatides04476-
Paelopatides04477-
Paelopatides04478-
Paelopatides04479UNCHARACTERIZED
Paelopatides04480-
Paelopatides04481PARANEOPLASTIC ANTIGEN
Paelopatides04482TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides04483-
Paelopatides04484PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides04485-
Paelopatides04486-
Paelopatides04487ENDONUCLEASE-RELATED
Paelopatides04488-
Paelopatides04489BONUS, ISOFORM C-RELATED
Paelopatides04490FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04491REVERSE TRANSCRIPTASE
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