About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04533-
Paelopatides04534CALCIUM-BINDING PROTEIN 8-RELATED
Paelopatides04535CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides04536ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides04537CRUMBS FAMILY MEMBER
Paelopatides04540-
Paelopatides04541GREB1-RELATED
Paelopatides04542GREB1-RELATED
Paelopatides04543PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Paelopatides04544-
Paelopatides04545DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides04546BUCENTAUR RELATED
Paelopatides04547PROTEIN CBG26694
Paelopatides04548PEPTIDASE
Paelopatides04549-
Paelopatides04550-
Paelopatides04551BONUS, ISOFORM C-RELATED
Paelopatides04552ADP RIBOSYLATION FACTOR-RELATED
Paelopatides04553ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04555MONOCARBOXYLATE TRANSPORTER
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