About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04576-
Paelopatides04577-
Paelopatides04578ENDONUCLEASE-RELATED
Paelopatides04579POL PROTEIN
Paelopatides04580PARANEOPLASTIC ANTIGEN
Paelopatides04581ENDONUCLEASE-RELATED
Paelopatides04582-
Paelopatides04583REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04584NG5
Paelopatides04585S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides04586REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04587-
Paelopatides04588-
Paelopatides04589-
Paelopatides04590REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04591PROTEIN CBG26694
Paelopatides04592-
Paelopatides04593METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED
Paelopatides04594HOOK PROTEINS
Paelopatides04595PROTEIN CBG05131
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