About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04513-
Paelopatides04514NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides04515REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04516T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides04517-
Paelopatides04518ENZYMATIC POLYPROTEIN-RELATED
Paelopatides04519AGAP005574-PA
Paelopatides04520TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides04521PROTEASE M1 ZINC METALLOPROTEASE
Paelopatides04522REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04523ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04524-
Paelopatides04525-
Paelopatides04526-
Paelopatides04527INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04528-
Paelopatides04529-
Paelopatides04530ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides04531FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04532ENDONUCLEASE
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