About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04390-
Paelopatides04391EPM2A-INTERACTING PROTEIN 1
Paelopatides04392-
Paelopatides04393-
Paelopatides04394IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides04395-
Paelopatides04396AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
Paelopatides04397CRUMBS FAMILY MEMBER
Paelopatides04398CRUMBS FAMILY MEMBER
Paelopatides04399CRUMBS FAMILY MEMBER
Paelopatides04400ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04401-
Paelopatides04402-
Paelopatides04404TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides04405EGF-LIKE-DOMAIN, MULTIPLE 7, 8
Paelopatides04406-
Paelopatides04407PROTEIN CBG26694
Paelopatides04408ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides04409-
Paelopatides04410CXC DOMAIN-CONTAINING PROTEIN-RELATED
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