About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04308-
Paelopatides04309RETROTRANSPOSON
Paelopatides04310RETROTRANSPOSON
Paelopatides04311PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides04312-
Paelopatides04313-
Paelopatides04315-
Paelopatides04316PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides04317ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04318REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04319PARANEOPLASTIC ANTIGEN
Paelopatides04320POL PROTEIN
Paelopatides04321-
Paelopatides04322TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides04323NUCLEAR PORE COMPLEX PROTEIN NUP160
Paelopatides04324-
Paelopatides04325PROTEIN CBG26694
Paelopatides04326-
Paelopatides04327PROTEIN CBG26694
Paelopatides04328PROTEIN CBG26694
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