About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04187-
Paelopatides04188CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04189CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04190CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04191CARBOXYLESTERASE
Paelopatides04192TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides04193-
Paelopatides04194-
Paelopatides04195MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides04196-
Paelopatides04197-
Paelopatides04198-
Paelopatides04199PROTEIN CBG26694
Paelopatides04200-
Paelopatides04201REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04202NUCLEAR PORE COMPLEX PROTEIN NUP
Paelopatides04203-
Paelopatides04204ADP-RIBOSYLGLYCOHYDROLASE
Paelopatides04205COLLAGEN ALPHA
Paelopatides04206ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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