About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04063TAX1 BINDING PROTEIN-RELATED
Paelopatides04064-
Paelopatides04065REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04066-
Paelopatides04067CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04068-
Paelopatides04069-
Paelopatides04070-
Paelopatides04071-
Paelopatides04072GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides04073-
Paelopatides04074DNA HELICASE RECQ FAMILY MEMBER
Paelopatides04075-
Paelopatides04076PEPTIDYLPROLYL ISOMERASE
Paelopatides04077SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2
Paelopatides04078-
Paelopatides04079PROTEIN CBG16428
Paelopatides04080-
Paelopatides04081EPM2A-INTERACTING PROTEIN 1
Paelopatides04082L1 TRANSPOSABLE ELEMENT-RELATED
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