About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04043ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides04044ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04045-
Paelopatides04046FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04047RETROTRANSPOSON
Paelopatides04048PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides04049SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Paelopatides04050POL PROTEIN
Paelopatides04051TESTIS-SPECIFIC Y-ENCODED PROTEIN
Paelopatides04052-
Paelopatides04053IONOTROPIC GLUTAMATE RECEPTOR
Paelopatides04054PROTEIN SIDEKICK
Paelopatides04055PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
Paelopatides04056-
Paelopatides04057-
Paelopatides04058SLR5058 PROTEIN
Paelopatides04059-
Paelopatides04060-
Paelopatides04061REVERSE TRANSCRIPTASES
Paelopatides04062-
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