About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03939ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides03940G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
Paelopatides03941ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides03942PROTOPORPHYRINOGEN OXIDASE
Paelopatides03943CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03944CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides03945REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03946-
Paelopatides03947ATP-DEPENDENT DNA HELICASE
Paelopatides03948REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03949EXODEOXYRIBONUCLEASE III
Paelopatides03950DNA HELICASE-RELATED
Paelopatides03951PROTEIN CBG26694
Paelopatides03952PROTEIN CBG26694
Paelopatides03953PROTEIN CBG26694
Paelopatides03954-
Paelopatides03955PROTEIN CBG26694
Paelopatides03956TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides03957ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides03958ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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