About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides03835-
Paelopatides03836UNCHARACTERIZED
Paelopatides03837FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides03838PROTEIN CBG26694
Paelopatides03839POL PROTEIN
Paelopatides03840ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides03841PARANEOPLASTIC ANTIGEN
Paelopatides03842ZGC:195170
Paelopatides03843-
Paelopatides03844LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides03845-
Paelopatides03846-
Paelopatides03847RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS
Paelopatides03848-
Paelopatides03849-
Paelopatides03850-
Paelopatides03851LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
Paelopatides03852FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides03853REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides03854MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
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