About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04127-
Paelopatides04128-
Paelopatides04129-
Paelopatides04130HOMEOBOX PROTEIN ARISTALESS
Paelopatides04131MULTICOPPER OXIDASE-RELATED
Paelopatides04132-
Paelopatides04133-
Paelopatides04134FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04135-
Paelopatides04136ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS
Paelopatides04137ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04138KINESIN LIGHT CHAIN
Paelopatides04139ANTIBIOTIC RESISTANCE PROTEIN MCBG
Paelopatides04140KINESIN LIGHT CHAIN
Paelopatides04141-
Paelopatides04142EUKARYOTIC TRANSLATION INITIATION FACTOR
Paelopatides04143-
Paelopatides04144PROTEIN CBG26694
Paelopatides04145-
Paelopatides04146TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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