About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04287G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides04288CYTOCHROME P450 508A4-RELATED
Paelopatides04289CYTOCHROME P450 508A4-RELATED
Paelopatides04290-
Paelopatides04291-
Paelopatides04292ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides04293PROTEIN CBG26694
Paelopatides04295N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides04296SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04297FARNESYLCYSTEINE LYASE
Paelopatides04298-
Paelopatides04299PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides04300COMPLEX III ASSEMBLY FACTOR LYRM7
Paelopatides04301MALATE DEHYDROGENASE
Paelopatides04302ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04303MYOSIN
Paelopatides04304-
Paelopatides04305LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides04306-
Paelopatides04307LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
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