About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04684DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides04685-
Paelopatides04686-
Paelopatides04687BONUS, ISOFORM C-RELATED
Paelopatides04688BONUS, ISOFORM C-RELATED
Paelopatides04689FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04690ENDONUCLEASE-RELATED
Paelopatides04691-
Paelopatides04692SERINE PROTEASE
Paelopatides04693MICROSOMAL GLUTATHIONE S-TRANSFERASE
Paelopatides04694-
Paelopatides04695-
Paelopatides04696CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1
Paelopatides04697-
Paelopatides04698ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides04699-
Paelopatides04700FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04701REVERSE TRANSCRIPTASES
Paelopatides04702NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides04703AP ENDONUCLEASE
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