About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04847TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides04848RAN BINDING PROTEIN
Paelopatides04849NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL
Paelopatides04850DCTP PYROPHOSPHATASE 1
Paelopatides04851MACROGLOBULIN / COMPLEMENT
Paelopatides04852-
Paelopatides04853NG5
Paelopatides04854-
Paelopatides04855-
Paelopatides04856-
Paelopatides04857-
Paelopatides04858-
Paelopatides04859-
Paelopatides04861FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides04862ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04863-
Paelopatides04864L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides04865-
Paelopatides04866PLACENTAL PROTEIN 11-RELATED
Paelopatides04867-
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