About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04910PARANEOPLASTIC ANTIGEN
Paelopatides04911POL PROTEIN
Paelopatides04912ENDONUCLEASE-RELATED
Paelopatides04914NOTCH LIGAND FAMILY MEMBER
Paelopatides04915-
Paelopatides04916PROTEIN CBG26694
Paelopatides04917-
Paelopatides04918PROTEIN CBG26694
Paelopatides04919ENDONUCLEASE-RELATED
Paelopatides04920ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides04921ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides04922PROTEIN CBG26694
Paelopatides04923PROTEIN CBG26694
Paelopatides04924PROTEIN CBG26694
Paelopatides04925PROTEIN CBG26694
Paelopatides04926NETRIN RECEPTOR UNC5
Paelopatides04927ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04928REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides04929-
Paelopatides04930FATTY ACID BINDING PROTEIN
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