About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04931FATTY ACID BINDING PROTEIN
Paelopatides04932PROTEIN, PUTATIVE-RELATED
Paelopatides04933SOLUTE CARRIER FAMILY 25 MEMBER 44
Paelopatides04934-
Paelopatides04935MUCIN
Paelopatides04936-
Paelopatides04937-
Paelopatides04938PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides04939RETROTRANSPOSON
Paelopatides04940GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides04941ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04942PROTEIN CBG26694
Paelopatides04943PROTEIN CBG26694
Paelopatides04944-
Paelopatides04945TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE
Paelopatides04946N-ALPHA-ACETYLTRANSFERASE 30
Paelopatides04947CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG
Paelopatides04948ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04949ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides04950-
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