About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides04868CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04869FI01416P
Paelopatides04870ARYLSULFATASE FAMILY MEMBER
Paelopatides04871ARYLSULFATASE FAMILY MEMBER
Paelopatides04872MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
Paelopatides04873CONTACTIN 5
Paelopatides04874SERINE/THREONINE-PROTEIN KINASE
Paelopatides04875TITIN
Paelopatides04876-
Paelopatides04877-
Paelopatides04878ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides04879FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides04880-
Paelopatides04881-
Paelopatides04882RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides04883CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04884CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04885CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides04886BTB DOMAIN-CONTAINING PROTEIN
Paelopatides04887-
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