About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05135-
Paelopatides05136-
Paelopatides05137SORTING NEXIN
Paelopatides05138GH11602P
Paelopatides05139REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05140PROTEIN CBG26694
Paelopatides05141ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides05142PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides05143ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides05144CARNITINE O-ACYLTRANSFERASE
Paelopatides05145CARNITINE O-ACYLTRANSFERASE
Paelopatides05146ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05147REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05148PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides05149ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides05150ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05151LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides05152REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05153-
Paelopatides05154PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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