About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05283EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
Paelopatides05284PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides05285-
Paelopatides05286-
Paelopatides05287ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides05288N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
Paelopatides05289RECEPTOR TRANSPORTING PROTEIN
Paelopatides05290DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides05291DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides05292ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05293F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides05295-
Paelopatides05296FI04487P
Paelopatides05297-
Paelopatides05298DNA2/NAM7 HELICASE FAMILY
Paelopatides05299EPM2A-INTERACTING PROTEIN 1
Paelopatides05300OS05G0565100 PROTEIN
Paelopatides05301NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4
Paelopatides05302NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4
Paelopatides05303DEATH DOMAIN-CONTAINING PROTEIN CRADD
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