Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_011928-T1 | |
LLU|FUN_011929-T1 | |
LLU|FUN_011930-T1 | |
LLU|FUN_011931-T1 | SODIUM/NUCLEOSIDE COTRANSPORTER |
LLU|FUN_011932-T1 | |
LLU|FUN_011933-T1 | |
LLU|FUN_011934-T1 | SODIUM/NUCLEOSIDE COTRANSPORTER |
LLU|FUN_011935-T1 | |
LLU|FUN_011936-T1 | |
LLU|FUN_011937-T1 | TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR |
LLU|FUN_011938-T1 | SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20 |
LLU|FUN_011939-T1 | NITRILASE-RELATED |
LLU|FUN_011940-T1 | KELCH DOMAIN-CONTAINING PROTEIN 10 |
LLU|FUN_011941-T1 | NUCLEAR-INTERACTING PARTNER OF ALK |
LLU|FUN_011942-T1 | |
LLU|FUN_011943-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
LLU|FUN_011944-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_011945-T1 | ADHESION G PROTEIN-COUPLED RECEPTOR G7 |
LLU|FUN_011946-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_011947-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
LLU|FUN_011948-T1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6 |
LLU|FUN_011949-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
LLU|FUN_011950-T1 | |
LLU|FUN_011951-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_011952-T1 | NISCHARIN RELATED |
LLU|FUN_011953-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011954-T1 | - |
LLU|FUN_011955-T1 | |
LLU|FUN_011956-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_011957-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_011958-T1 | - |
LLU|FUN_011959-T1 | PHOSPHOLIPASE-RELATED |
LLU|FUN_011960-T1 | |
LLU|FUN_011961-T1 | TRANSMEMBRANE PROTEIN 168 |
LLU|FUN_011962-T1 | RAGULATOR COMPLEX PROTEIN LAMTOR5 |
LLU|FUN_011963-T1 | ZYGOTE ARREST PROTEIN 1-LIKE ISOFORM X1 |
LLU|FUN_011964-T1 | ZYGOTE ARREST PROTEIN 1-LIKE ISOFORM X1 |
LLU|FUN_011965-T1 | |
LLU|FUN_011966-T1 | |
LLU|FUN_011967-T1 | |
LLU|FUN_011968-T1 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
LLU|FUN_011969-T1 | |
LLU|FUN_011970-T1 | CYCLIN |
LLU|FUN_011971-T1 | |
LLU|FUN_011972-T1 | |
LLU|FUN_011973-T1 | ANKYRIN REPEAT DOMAIN 36-RELATED |
LLU|FUN_011974-T1 | |
LLU|FUN_011975-T1 | |
LLU|FUN_011976-T1 | |
LLU|FUN_011977-T1 | DNA LIGASE |