About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_011928-T1
LLU|FUN_011929-T1
LLU|FUN_011930-T1
LLU|FUN_011931-T1SODIUM/NUCLEOSIDE COTRANSPORTER
LLU|FUN_011932-T1
LLU|FUN_011933-T1
LLU|FUN_011934-T1SODIUM/NUCLEOSIDE COTRANSPORTER
LLU|FUN_011935-T1
LLU|FUN_011936-T1
LLU|FUN_011937-T1TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
LLU|FUN_011938-T1SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
LLU|FUN_011939-T1NITRILASE-RELATED
LLU|FUN_011940-T1KELCH DOMAIN-CONTAINING PROTEIN 10
LLU|FUN_011941-T1NUCLEAR-INTERACTING PARTNER OF ALK
LLU|FUN_011942-T1
LLU|FUN_011943-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_011944-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
LLU|FUN_011945-T1ADHESION G PROTEIN-COUPLED RECEPTOR G7
LLU|FUN_011946-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
LLU|FUN_011947-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT
LLU|FUN_011948-T1COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6
LLU|FUN_011949-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
LLU|FUN_011950-T1
LLU|FUN_011951-T1BONUS, ISOFORM C-RELATED
LLU|FUN_011952-T1NISCHARIN RELATED
LLU|FUN_011953-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
LLU|FUN_011954-T1-
LLU|FUN_011955-T1
LLU|FUN_011956-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
LLU|FUN_011957-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
LLU|FUN_011958-T1-
LLU|FUN_011959-T1PHOSPHOLIPASE-RELATED
LLU|FUN_011960-T1
LLU|FUN_011961-T1TRANSMEMBRANE PROTEIN 168
LLU|FUN_011962-T1RAGULATOR COMPLEX PROTEIN LAMTOR5
LLU|FUN_011963-T1ZYGOTE ARREST PROTEIN 1-LIKE ISOFORM X1
LLU|FUN_011964-T1ZYGOTE ARREST PROTEIN 1-LIKE ISOFORM X1
LLU|FUN_011965-T1
LLU|FUN_011966-T1
LLU|FUN_011967-T1
LLU|FUN_011968-T1NUCLEAR HORMONE RECEPTOR HR3-RELATED
LLU|FUN_011969-T1
LLU|FUN_011970-T1CYCLIN
LLU|FUN_011971-T1
LLU|FUN_011972-T1
LLU|FUN_011973-T1ANKYRIN REPEAT DOMAIN 36-RELATED
LLU|FUN_011974-T1
LLU|FUN_011975-T1
LLU|FUN_011976-T1
LLU|FUN_011977-T1DNA LIGASE
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