About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_011677-T1
LLU|FUN_011678-T1
LLU|FUN_011679-T1TNF RECEPTOR ASSOCIATED FACTOR
LLU|FUN_011680-T1
LLU|FUN_011681-T1PROTEIN CBG12054-RELATED
LLU|FUN_011682-T1PROTEIN CBG12054-RELATED
LLU|FUN_011683-T1PROTEIN CBG12054-RELATED
LLU|FUN_011684-T1SI:DKEY-19B23.12-RELATED
LLU|FUN_011685-T1
LLU|FUN_011686-T1
LLU|FUN_011687-T1TOLL-LIKE RECEPTOR 7-RELATED
LLU|FUN_011688-T1UNCHARACTERIZED
LLU|FUN_011689-T1CRUMBS FAMILY MEMBER
LLU|FUN_011690-T1PROTEIN PHOSPHATASE
LLU|FUN_011691-T1ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
LLU|FUN_011692-T1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
LLU|FUN_011693-T1ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7
LLU|FUN_011694-T1
LLU|FUN_011695-T1CYSTEINE-RICH, ACIDIC INTEGRAL MEMBRANE PROTEIN-RELATED
LLU|FUN_011696-T1
LLU|FUN_011697-T1
LLU|FUN_011698-T1NUCLEAR HORMONE RECEPTOR
LLU|FUN_011699-T1
LLU|FUN_011700-T1REGULATOR OF CHROMOSOME CONDENSATION
LLU|FUN_011701-T1
LLU|FUN_011702-T1
LLU|FUN_011703-T1REGULATOR OF CHROMOSOME CONDENSATION
LLU|FUN_011704-T1SORTING NEXIN-22 AND 24
LLU|FUN_011705-T139S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL
LLU|FUN_011706-T1PEROXISOMAL BIOGENESIS FACTOR 11
LLU|FUN_011707-T1NADH-UBIQUINONE OXIDOREDUCTASE
LLU|FUN_011708-T1RNA-BINDING PROTEIN 8A
LLU|FUN_011709-T1
LLU|FUN_011710-T1
LLU|FUN_011711-T1SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL
LLU|FUN_011712-T1SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL
LLU|FUN_011713-T1
LLU|FUN_011714-T1THROMBOSPONDIN
LLU|FUN_011715-T1
LLU|FUN_011716-T1FLAP ENDONUCLEASE FAMILY MEMBER
LLU|FUN_011717-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_011718-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_011719-T1
LLU|FUN_011720-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_011721-T1BETA-HEXOSAMINIDASE
LLU|FUN_011722-T1
LLU|FUN_011723-T1
LLU|FUN_011724-T1BETA-HEXOSAMINIDASE
LLU|FUN_011725-T1BETA-HEXOSAMINIDASE
LLU|FUN_011726-T1
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