Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_011677-T1 | |
LLU|FUN_011678-T1 | |
LLU|FUN_011679-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
LLU|FUN_011680-T1 | |
LLU|FUN_011681-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_011682-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_011683-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_011684-T1 | SI:DKEY-19B23.12-RELATED |
LLU|FUN_011685-T1 | |
LLU|FUN_011686-T1 | |
LLU|FUN_011687-T1 | TOLL-LIKE RECEPTOR 7-RELATED |
LLU|FUN_011688-T1 | UNCHARACTERIZED |
LLU|FUN_011689-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_011690-T1 | PROTEIN PHOSPHATASE |
LLU|FUN_011691-T1 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
LLU|FUN_011692-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
LLU|FUN_011693-T1 | ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7 |
LLU|FUN_011694-T1 | |
LLU|FUN_011695-T1 | CYSTEINE-RICH, ACIDIC INTEGRAL MEMBRANE PROTEIN-RELATED |
LLU|FUN_011696-T1 | |
LLU|FUN_011697-T1 | |
LLU|FUN_011698-T1 | NUCLEAR HORMONE RECEPTOR |
LLU|FUN_011699-T1 | |
LLU|FUN_011700-T1 | REGULATOR OF CHROMOSOME CONDENSATION |
LLU|FUN_011701-T1 | |
LLU|FUN_011702-T1 | |
LLU|FUN_011703-T1 | REGULATOR OF CHROMOSOME CONDENSATION |
LLU|FUN_011704-T1 | SORTING NEXIN-22 AND 24 |
LLU|FUN_011705-T1 | 39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL |
LLU|FUN_011706-T1 | PEROXISOMAL BIOGENESIS FACTOR 11 |
LLU|FUN_011707-T1 | NADH-UBIQUINONE OXIDOREDUCTASE |
LLU|FUN_011708-T1 | RNA-BINDING PROTEIN 8A |
LLU|FUN_011709-T1 | |
LLU|FUN_011710-T1 | |
LLU|FUN_011711-T1 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
LLU|FUN_011712-T1 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
LLU|FUN_011713-T1 | |
LLU|FUN_011714-T1 | THROMBOSPONDIN |
LLU|FUN_011715-T1 | |
LLU|FUN_011716-T1 | FLAP ENDONUCLEASE FAMILY MEMBER |
LLU|FUN_011717-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_011718-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_011719-T1 | |
LLU|FUN_011720-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_011721-T1 | BETA-HEXOSAMINIDASE |
LLU|FUN_011722-T1 | |
LLU|FUN_011723-T1 | |
LLU|FUN_011724-T1 | BETA-HEXOSAMINIDASE |
LLU|FUN_011725-T1 | BETA-HEXOSAMINIDASE |
LLU|FUN_011726-T1 |