About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_011526-T1STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN
LLU|FUN_011527-T1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
LLU|FUN_011528-T1
LLU|FUN_011529-T1
LLU|FUN_011530-T1
LLU|FUN_011531-T1
LLU|FUN_011532-T1
LLU|FUN_011533-T1
LLU|FUN_011534-T1
LLU|FUN_011535-T1
LLU|FUN_011536-T1INNEXIN
LLU|FUN_011537-T1
LLU|FUN_011538-T1EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED
LLU|FUN_011539-T1
LLU|FUN_011540-T1
LLU|FUN_011541-T1ACETYLGLUCOSAMINYLTRANSFERASE
LLU|FUN_011542-T1ENDORIBONUCLEASE LACTB2
LLU|FUN_011543-T1OCTANOYLTRANSFERASE
LLU|FUN_011544-T1
LLU|FUN_011545-T1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
LLU|FUN_011546-T1
LLU|FUN_011547-T1
LLU|FUN_011548-T1
LLU|FUN_011549-T1
LLU|FUN_011550-T1SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED
LLU|FUN_011551-T1CADHERIN-23
LLU|FUN_011552-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
LLU|FUN_011553-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
LLU|FUN_011554-T1ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE
LLU|FUN_011555-T1
LLU|FUN_011556-T1SHISA
LLU|FUN_011557-T1
LLU|FUN_011558-T1
LLU|FUN_011559-T1
LLU|FUN_011560-T1
LLU|FUN_011561-T1HEAT SHOCK PROTEIN 70KDA
LLU|FUN_011562-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_011563-T1
LLU|FUN_011564-T1HEAT SHOCK PROTEIN 70KDA
LLU|FUN_011565-T1SODIUM/HYDROGEN EXCHANGER
LLU|FUN_011566-T1
LLU|FUN_011567-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
LLU|FUN_011568-T1
LLU|FUN_011569-T1
LLU|FUN_011570-T1
LLU|FUN_011571-T1
LLU|FUN_011572-T1NETRIN/LAMININ-RELATED
LLU|FUN_011573-T1PROTEIN CBG24663
LLU|FUN_011574-T1
LLU|FUN_011576-T1
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