About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_011274-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_011275-T1
LLU|FUN_011276-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_011277-T1
LLU|FUN_011278-T1
LLU|FUN_011279-T1
LLU|FUN_011280-T1DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4
LLU|FUN_011281-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
LLU|FUN_011282-T1
LLU|FUN_011283-T1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_011284-T1
LLU|FUN_011285-T1DNA-DIRECTED RNA POLYMERASE I,II,III
LLU|FUN_011286-T1GTPASE ERA
LLU|FUN_011287-T1FATTY ACID ACYL TRANSFERASE-RELATED
LLU|FUN_011288-T1COLON CANCER-ASSOCIATED PROTEIN MIC1
LLU|FUN_011289-T1FATTY ACID ACYL TRANSFERASE-RELATED
LLU|FUN_011290-T1
LLU|FUN_011291-T1
LLU|FUN_011292-T1DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
LLU|FUN_011293-T1SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1
LLU|FUN_011294-T1ATP-DEPENDENT RNA HELICASE
LLU|FUN_011295-T1
LLU|FUN_011296-T1UNCHARACTERIZED
LLU|FUN_011297-T1
LLU|FUN_011298-T1
LLU|FUN_011299-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
LLU|FUN_011300-T1IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
LLU|FUN_011301-T1BCL7 RELATED
LLU|FUN_011302-T1
LLU|FUN_011303-T1CELL DIVISION PROTEIN KINASE
LLU|FUN_011304-T1RYANODINE RECEPTOR AND IP3 RECEPTOR
LLU|FUN_011305-T1GRAM DOMAIN-CONTAINING PROTEIN 2B-RELATED
LLU|FUN_011306-T1
LLU|FUN_011307-T1
LLU|FUN_011308-T1CELL CYCLE CONTROL PROTEIN 50
LLU|FUN_011309-T1HEAT SHOCK PROTEIN HSP-12.2-RELATED
LLU|FUN_011310-T1HEAT SHOCK PROTEIN HSP-12.2-RELATED
LLU|FUN_011311-T1
LLU|FUN_011312-T1
LLU|FUN_011313-T1
LLU|FUN_011314-T1OPSIN
LLU|FUN_011315-T1IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
LLU|FUN_011316-T1
LLU|FUN_011318-T1
LLU|FUN_011319-T1
LLU|FUN_011320-T1
LLU|FUN_011321-T1
LLU|FUN_011322-T1
LLU|FUN_011323-T1
LLU|FUN_011324-T1-
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