Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_011274-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_011275-T1 | |
LLU|FUN_011276-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011277-T1 | |
LLU|FUN_011278-T1 | |
LLU|FUN_011279-T1 | |
LLU|FUN_011280-T1 | DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 |
LLU|FUN_011281-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_011282-T1 | |
LLU|FUN_011283-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011284-T1 | |
LLU|FUN_011285-T1 | DNA-DIRECTED RNA POLYMERASE I,II,III |
LLU|FUN_011286-T1 | GTPASE ERA |
LLU|FUN_011287-T1 | FATTY ACID ACYL TRANSFERASE-RELATED |
LLU|FUN_011288-T1 | COLON CANCER-ASSOCIATED PROTEIN MIC1 |
LLU|FUN_011289-T1 | FATTY ACID ACYL TRANSFERASE-RELATED |
LLU|FUN_011290-T1 | |
LLU|FUN_011291-T1 | |
LLU|FUN_011292-T1 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
LLU|FUN_011293-T1 | SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 |
LLU|FUN_011294-T1 | ATP-DEPENDENT RNA HELICASE |
LLU|FUN_011295-T1 | |
LLU|FUN_011296-T1 | UNCHARACTERIZED |
LLU|FUN_011297-T1 | |
LLU|FUN_011298-T1 | |
LLU|FUN_011299-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_011300-T1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
LLU|FUN_011301-T1 | BCL7 RELATED |
LLU|FUN_011302-T1 | |
LLU|FUN_011303-T1 | CELL DIVISION PROTEIN KINASE |
LLU|FUN_011304-T1 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
LLU|FUN_011305-T1 | GRAM DOMAIN-CONTAINING PROTEIN 2B-RELATED |
LLU|FUN_011306-T1 | |
LLU|FUN_011307-T1 | |
LLU|FUN_011308-T1 | CELL CYCLE CONTROL PROTEIN 50 |
LLU|FUN_011309-T1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
LLU|FUN_011310-T1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
LLU|FUN_011311-T1 | |
LLU|FUN_011312-T1 | |
LLU|FUN_011313-T1 | |
LLU|FUN_011314-T1 | OPSIN |
LLU|FUN_011315-T1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011316-T1 | |
LLU|FUN_011318-T1 | |
LLU|FUN_011319-T1 | |
LLU|FUN_011320-T1 | |
LLU|FUN_011321-T1 | |
LLU|FUN_011322-T1 | |
LLU|FUN_011323-T1 | |
LLU|FUN_011324-T1 | - |