Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_011325-T1 | DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_011326-T1 | GOLGI SNARE BET1-RELATED |
LLU|FUN_011327-T1 | SERINE PROTEASE INHIBITOR, SERPIN |
LLU|FUN_011328-T1 | |
LLU|FUN_011329-T1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
LLU|FUN_011330-T1 | LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE |
LLU|FUN_011331-T1 | WD REPEAT CONTAINING PROTEIN |
LLU|FUN_011332-T1 | PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN |
LLU|FUN_011333-T1 | UBX DOMAIN CONTAINING PROTEIN |
LLU|FUN_011334-T1 | |
LLU|FUN_011335-T1 | |
LLU|FUN_011336-T1 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
LLU|FUN_011337-T1 | |
LLU|FUN_011338-T1 | |
LLU|FUN_011339-T1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011340-T1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011341-T1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011342-T1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011343-T1 | |
LLU|FUN_011344-T1 | DBX |
LLU|FUN_011345-T1 | |
LLU|FUN_011346-T1 | |
LLU|FUN_011347-T1 | |
LLU|FUN_011348-T1 | ZGC:172139 |
LLU|FUN_011349-T1 | |
LLU|FUN_011350-T1 | |
LLU|FUN_011351-T1 | |
LLU|FUN_011352-T1 | ATAXIN-3-RELATED |
LLU|FUN_011353-T1 | RADIAL SPOKEHEAD-RELATED |
LLU|FUN_011354-T1 | SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_011355-T1 | UNCHARACTERIZED |
LLU|FUN_011356-T1 | |
LLU|FUN_011357-T1 | |
LLU|FUN_011358-T1 | GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE |
LLU|FUN_011359-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 117 |
LLU|FUN_011360-T1 | MORN REPEAT-CONTAINING PROTEIN 3 |
LLU|FUN_011361-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 |
LLU|FUN_011362-T1 | RE45066P-RELATED |
LLU|FUN_011363-T1 | RE45066P-RELATED |
LLU|FUN_011364-T1 | |
LLU|FUN_011365-T1 | |
LLU|FUN_011366-T1 | |
LLU|FUN_011367-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011368-T1 | |
LLU|FUN_011369-T1 | |
LLU|FUN_011370-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011371-T1 | |
LLU|FUN_011372-T1 | |
LLU|FUN_011373-T1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_011374-T1 |