Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_011224-T1 | |
LLU|FUN_011225-T1 | |
LLU|FUN_011226-T1 | |
LLU|FUN_011227-T1 | ZGC:136858 |
LLU|FUN_011228-T1 | EG:80H7.2 PROTEIN |
LLU|FUN_011229-T1 | EG:80H7.2 PROTEIN |
LLU|FUN_011230-T1 | EG:80H7.2 PROTEIN |
LLU|FUN_011231-T1 | ZGC:136858 |
LLU|FUN_011232-T1 | NUCLEAR PORE COMPLEX PROTEIN NUP1 |
LLU|FUN_011233-T1 | GLUTAMINASE |
LLU|FUN_011234-T1 | TGF-BETA FAMILY |
LLU|FUN_011235-T1 | CGI-12 PROTEIN-RELATED |
LLU|FUN_011236-T1 | GEO09665P1-RELATED |
LLU|FUN_011237-T1 | RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN |
LLU|FUN_011238-T1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 FAMILY MEMBER |
LLU|FUN_011239-T1 | LIPASE |
LLU|FUN_011240-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
LLU|FUN_011241-T1 | NAD(P) TRANSHYDROGENASE |
LLU|FUN_011242-T1 | NADP-SPECIFIC ISOCITRATE DEHYDROGENASE |
LLU|FUN_011243-T1 | GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN |
LLU|FUN_011244-T1 | EXOCYST COMPLEX COMPONENT SEC6-RELATED |
LLU|FUN_011245-T1 | F-BOX ONLY PROTEIN 5 AND 43 |
LLU|FUN_011246-T1 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED |
LLU|FUN_011247-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
LLU|FUN_011248-T1 | |
LLU|FUN_011249-T1 | |
LLU|FUN_011250-T1 | |
LLU|FUN_011251-T1 | |
LLU|FUN_011252-T1 | |
LLU|FUN_011253-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
LLU|FUN_011254-T1 | |
LLU|FUN_011255-T1 | |
LLU|FUN_011256-T1 | |
LLU|FUN_011257-T1 | |
LLU|FUN_011258-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
LLU|FUN_011259-T1 | |
LLU|FUN_011260-T1 | PR DOMAIN ZINC FINGER PROTEIN |
LLU|FUN_011261-T1 | |
LLU|FUN_011262-T1 | |
LLU|FUN_011263-T1 | |
LLU|FUN_011264-T1 | |
LLU|FUN_011265-T1 | |
LLU|FUN_011266-T1 | SPERM-SPECIFIC FAMILY, CLASS Q |
LLU|FUN_011267-T1 | |
LLU|FUN_011268-T1 | GABA-B RECEPTOR |
LLU|FUN_011269-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_011270-T1 | |
LLU|FUN_011271-T1 | |
LLU|FUN_011272-T1 | |
LLU|FUN_011273-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |