About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_011777-T1
LLU|FUN_011778-T1PARTNER OF XRN-2 PROTEIN 1
LLU|FUN_011779-T130S 40S RIBOSOMAL PROTEIN
LLU|FUN_011780-T1RAS GTPASE-ACTIVATING PROTEINS
LLU|FUN_011781-T1
LLU|FUN_011782-T1LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
LLU|FUN_011783-T1UNCHARACTERIZED
LLU|FUN_011784-T1ANKYRIN REPEAT-CONTAINING
LLU|FUN_011785-T1B-CELL TRANSLOCATION GENE
LLU|FUN_011786-T139S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL
LLU|FUN_011787-T1DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
LLU|FUN_011788-T1HOMOSERINE O-ACETYLTRANSFERASE
LLU|FUN_011789-T1
LLU|FUN_011790-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_011791-T1
LLU|FUN_011792-T11-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
LLU|FUN_011793-T11-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
LLU|FUN_011794-T1UPF0315 PROTEIN-RELATED
LLU|FUN_011795-T1QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2
LLU|FUN_011796-T1RIBOSOME RECYCLING FACTOR
LLU|FUN_011797-T1
LLU|FUN_011798-T1PROTEIN FAM78A
LLU|FUN_011799-T1SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE
LLU|FUN_011800-T1PREFOLDIN SUBUNIT 6
LLU|FUN_011801-T1SURFEIT LOCUS PROTEIN
LLU|FUN_011802-T1INNEXIN
LLU|FUN_011803-T1INNEXIN
LLU|FUN_011804-T1INNEXIN
LLU|FUN_011805-T1INNEXIN
LLU|FUN_011806-T1
LLU|FUN_011807-T1
LLU|FUN_011808-T1
LLU|FUN_011809-T1
LLU|FUN_011810-T1QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE
LLU|FUN_011811-T1
LLU|FUN_011812-T1
LLU|FUN_011813-T1TON-B BOX DOMAIN
LLU|FUN_011814-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 105
LLU|FUN_011815-T1DRAB11-RELATED
LLU|FUN_011816-T1
LLU|FUN_011817-T1
LLU|FUN_011818-T1
LLU|FUN_011819-T1
LLU|FUN_011820-T1WD40 REPEAT DOMAIN 95
LLU|FUN_011821-T1WD40 REPEAT DOMAIN 95
LLU|FUN_011822-T1DYNAMIN
LLU|FUN_011823-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_011824-T1
LLU|FUN_011825-T1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S30/P52 PRO-APOTOTIC PROTEIN
LLU|FUN_011826-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
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