Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_011777-T1 | |
LLU|FUN_011778-T1 | PARTNER OF XRN-2 PROTEIN 1 |
LLU|FUN_011779-T1 | 30S 40S RIBOSOMAL PROTEIN |
LLU|FUN_011780-T1 | RAS GTPASE-ACTIVATING PROTEINS |
LLU|FUN_011781-T1 | |
LLU|FUN_011782-T1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
LLU|FUN_011783-T1 | UNCHARACTERIZED |
LLU|FUN_011784-T1 | ANKYRIN REPEAT-CONTAINING |
LLU|FUN_011785-T1 | B-CELL TRANSLOCATION GENE |
LLU|FUN_011786-T1 | 39S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL |
LLU|FUN_011787-T1 | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A |
LLU|FUN_011788-T1 | HOMOSERINE O-ACETYLTRANSFERASE |
LLU|FUN_011789-T1 | |
LLU|FUN_011790-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_011791-T1 | |
LLU|FUN_011792-T1 | 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
LLU|FUN_011793-T1 | 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
LLU|FUN_011794-T1 | UPF0315 PROTEIN-RELATED |
LLU|FUN_011795-T1 | QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 |
LLU|FUN_011796-T1 | RIBOSOME RECYCLING FACTOR |
LLU|FUN_011797-T1 | |
LLU|FUN_011798-T1 | PROTEIN FAM78A |
LLU|FUN_011799-T1 | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE |
LLU|FUN_011800-T1 | PREFOLDIN SUBUNIT 6 |
LLU|FUN_011801-T1 | SURFEIT LOCUS PROTEIN |
LLU|FUN_011802-T1 | INNEXIN |
LLU|FUN_011803-T1 | INNEXIN |
LLU|FUN_011804-T1 | INNEXIN |
LLU|FUN_011805-T1 | INNEXIN |
LLU|FUN_011806-T1 | |
LLU|FUN_011807-T1 | |
LLU|FUN_011808-T1 | |
LLU|FUN_011809-T1 | |
LLU|FUN_011810-T1 | QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE |
LLU|FUN_011811-T1 | |
LLU|FUN_011812-T1 | |
LLU|FUN_011813-T1 | TON-B BOX DOMAIN |
LLU|FUN_011814-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 105 |
LLU|FUN_011815-T1 | DRAB11-RELATED |
LLU|FUN_011816-T1 | |
LLU|FUN_011817-T1 | |
LLU|FUN_011818-T1 | |
LLU|FUN_011819-T1 | |
LLU|FUN_011820-T1 | WD40 REPEAT DOMAIN 95 |
LLU|FUN_011821-T1 | WD40 REPEAT DOMAIN 95 |
LLU|FUN_011822-T1 | DYNAMIN |
LLU|FUN_011823-T1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_011824-T1 | |
LLU|FUN_011825-T1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S30/P52 PRO-APOTOTIC PROTEIN |
LLU|FUN_011826-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |