About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_011878-T1HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1
LLU|FUN_011879-T1
LLU|FUN_011880-T1
LLU|FUN_011881-T1
LLU|FUN_011882-T1
LLU|FUN_011883-T1
LLU|FUN_011884-T1
LLU|FUN_011885-T1FACIOGENITAL DYSPLASIA PROTEIN
LLU|FUN_011886-T1
LLU|FUN_011887-T1
LLU|FUN_011888-T1
LLU|FUN_011889-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
LLU|FUN_011890-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
LLU|FUN_011891-T1CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
LLU|FUN_011892-T1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
LLU|FUN_011893-T1
LLU|FUN_011894-T1
LLU|FUN_011895-T1
LLU|FUN_011896-T1
LLU|FUN_011897-T1
LLU|FUN_011898-T1
LLU|FUN_011899-T1
LLU|FUN_011900-T1
LLU|FUN_011901-T1
LLU|FUN_011902-T1
LLU|FUN_011903-T1
LLU|FUN_011904-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_011905-T1
LLU|FUN_011906-T1
LLU|FUN_011907-T1ANKYRIN REPEAT FAMILY PROTEIN
LLU|FUN_011908-T1
LLU|FUN_011909-T1ZINC FINGER PROTEIN 593
LLU|FUN_011910-T1YIPPEE DOMAIN-CONTAINING PROTEIN
LLU|FUN_011911-T1
LLU|FUN_011912-T1ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN
LLU|FUN_011913-T1
LLU|FUN_011914-T1N-ACETYLTRANSFERASE 9
LLU|FUN_011915-T1
LLU|FUN_011916-T1CYTOKINE RECEPTOR
LLU|FUN_011917-T1SER/THR-RICH PROTEIN T10 IN DGCR REGION
LLU|FUN_011918-T1
LLU|FUN_011919-T1DNA2/NAM7 HELICASE FAMILY
LLU|FUN_011920-T1
LLU|FUN_011921-T1
LLU|FUN_011922-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_011923-T1HISTONE DEACETYLASE HDAC1-RELATED
LLU|FUN_011924-T1STG PROTEIN
LLU|FUN_011925-T1
LLU|FUN_011926-T1UFM1-SPECIFIC PROTEASE 2
LLU|FUN_011927-T1UBIQUITIN-CONJUGATING ENZYME E2
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