Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_011727-T1 | |
LLU|FUN_011728-T1 | BETA-HEXOSAMINIDASE |
LLU|FUN_011729-T1 | BETA-HEXOSAMINIDASE |
LLU|FUN_011730-T1 | PROTEIN FAM227B |
LLU|FUN_011731-T1 | |
LLU|FUN_011732-T1 | |
LLU|FUN_011733-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_011734-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_011735-T1 | ABC TRANSPORTER B FAMILY |
LLU|FUN_011736-T1 | ATP-BINDING CASSETTE SUB-FAMILY B |
LLU|FUN_011737-T1 | ATP-BINDING CASSETTE SUB-FAMILY B |
LLU|FUN_011738-T1 | ATP-BINDING CASSETTE SUB-FAMILY B |
LLU|FUN_011739-T1 | |
LLU|FUN_011740-T1 | ABC TRANSPORTER B FAMILY |
LLU|FUN_011741-T1 | D-ERYTHRULOSE REDUCTASE |
LLU|FUN_011742-T1 | INTELECTIN |
LLU|FUN_011743-T1 | |
LLU|FUN_011744-T1 | |
LLU|FUN_011745-T1 | |
LLU|FUN_011746-T1 | MUCIN 4-RELATED |
LLU|FUN_011747-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_011748-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_011749-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_011750-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_011751-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_011752-T1 | |
LLU|FUN_011753-T1 | |
LLU|FUN_011754-T1 | |
LLU|FUN_011755-T1 | ACTIN |
LLU|FUN_011756-T1 | ACTIN |
LLU|FUN_011757-T1 | |
LLU|FUN_011758-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 61 |
LLU|FUN_011759-T1 | BETA1,4 MANNOSYLTRANSFERASE |
LLU|FUN_011760-T1 | MYOSIN VII, XV |
LLU|FUN_011761-T1 | ABC TRANSPORTER B FAMILY |
LLU|FUN_011762-T1 | |
LLU|FUN_011763-T1 | ABC TRANSPORTER B FAMILY |
LLU|FUN_011764-T1 | |
LLU|FUN_011765-T1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
LLU|FUN_011766-T1 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5 |
LLU|FUN_011767-T1 | |
LLU|FUN_011768-T1 | FOLYLPOLYGLUTAMATE SYNTHASE-RELATED |
LLU|FUN_011769-T1 | MUCIN 4-RELATED |
LLU|FUN_011770-T1 | |
LLU|FUN_011771-T1 | |
LLU|FUN_011772-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_011773-T1 | LIN-24 (TWENTY-FOUR) LIKE |
LLU|FUN_011774-T1 | |
LLU|FUN_011775-T1 | |
LLU|FUN_011776-T1 | LIN-24 (TWENTY-FOUR) LIKE |