About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_012079-T1
LLU|FUN_012080-T1
LLU|FUN_012081-T1
LLU|FUN_012082-T1HOMEOBOX PROTEIN UNC-4 HOMOLOG
LLU|FUN_012083-T1
LLU|FUN_012084-T1ALPHA-N-ACETYLGLUCOSAMINIDASE
LLU|FUN_012085-T1ALPHA-N-ACETYLGLUCOSAMINIDASE
LLU|FUN_012086-T1ALPHA-N-ACETYLGLUCOSAMINIDASE
LLU|FUN_012087-T1D-AMINO ACID OXIDASE
LLU|FUN_012088-T1SYNAPTOSOMAL ASSOCIATED PROTEIN
LLU|FUN_012089-T1TRYPSIN-RELATED
LLU|FUN_012090-T1OVOCHYMASE-RELATED
LLU|FUN_012091-T1OVOCHYMASE-RELATED
LLU|FUN_012092-T1ACROSIN-RELATED
LLU|FUN_012093-T1
LLU|FUN_012094-T1SORTILIN RELATED
LLU|FUN_012095-T1UNCHARACTERIZED
LLU|FUN_012096-T1CALCIUM BINDING PROTEINS
LLU|FUN_012097-T1
LLU|FUN_012098-T1
LLU|FUN_012099-T1ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT
LLU|FUN_012100-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 153
LLU|FUN_012101-T1VACUOLAR PROTEIN SORTING 26 RELATED
LLU|FUN_012102-T1
LLU|FUN_012103-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 153
LLU|FUN_012104-T1PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1
LLU|FUN_012105-T1SUCCINATE DEHYDROGENASE
LLU|FUN_012106-T1NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A
LLU|FUN_012107-T1
LLU|FUN_012108-T1KNIRPS-RELATED PROTEIN-RELATED
LLU|FUN_012109-T1
LLU|FUN_012110-T1
LLU|FUN_012111-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_012112-T1
LLU|FUN_012113-T1ATP SYNTHASE SUBUNIT
LLU|FUN_012114-T1STEROL DESATURASE
LLU|FUN_012115-T1SUGAR KINASE
LLU|FUN_012116-T1SUGAR KINASE
LLU|FUN_012117-T1
LLU|FUN_012118-T1SUGAR KINASE
LLU|FUN_012119-T1
LLU|FUN_012120-T1NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT
LLU|FUN_012121-T1NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT
LLU|FUN_012122-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_012123-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_012124-T1SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
LLU|FUN_012125-T1
LLU|FUN_012126-T1ZGC:153157
LLU|FUN_012127-T1PROTEIN CBG11839-RELATED
LLU|FUN_012128-T1NEUROTRANSMITTER GATED ION CHANNEL
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