Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_012079-T1 | |
LLU|FUN_012080-T1 | |
LLU|FUN_012081-T1 | |
LLU|FUN_012082-T1 | HOMEOBOX PROTEIN UNC-4 HOMOLOG |
LLU|FUN_012083-T1 | |
LLU|FUN_012084-T1 | ALPHA-N-ACETYLGLUCOSAMINIDASE |
LLU|FUN_012085-T1 | ALPHA-N-ACETYLGLUCOSAMINIDASE |
LLU|FUN_012086-T1 | ALPHA-N-ACETYLGLUCOSAMINIDASE |
LLU|FUN_012087-T1 | D-AMINO ACID OXIDASE |
LLU|FUN_012088-T1 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
LLU|FUN_012089-T1 | TRYPSIN-RELATED |
LLU|FUN_012090-T1 | OVOCHYMASE-RELATED |
LLU|FUN_012091-T1 | OVOCHYMASE-RELATED |
LLU|FUN_012092-T1 | ACROSIN-RELATED |
LLU|FUN_012093-T1 | |
LLU|FUN_012094-T1 | SORTILIN RELATED |
LLU|FUN_012095-T1 | UNCHARACTERIZED |
LLU|FUN_012096-T1 | CALCIUM BINDING PROTEINS |
LLU|FUN_012097-T1 | |
LLU|FUN_012098-T1 | |
LLU|FUN_012099-T1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
LLU|FUN_012100-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 153 |
LLU|FUN_012101-T1 | VACUOLAR PROTEIN SORTING 26 RELATED |
LLU|FUN_012102-T1 | |
LLU|FUN_012103-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 153 |
LLU|FUN_012104-T1 | PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1 |
LLU|FUN_012105-T1 | SUCCINATE DEHYDROGENASE |
LLU|FUN_012106-T1 | NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A |
LLU|FUN_012107-T1 | |
LLU|FUN_012108-T1 | KNIRPS-RELATED PROTEIN-RELATED |
LLU|FUN_012109-T1 | |
LLU|FUN_012110-T1 | |
LLU|FUN_012111-T1 | POLYCYSTIN FAMILY MEMBER |
LLU|FUN_012112-T1 | |
LLU|FUN_012113-T1 | ATP SYNTHASE SUBUNIT |
LLU|FUN_012114-T1 | STEROL DESATURASE |
LLU|FUN_012115-T1 | SUGAR KINASE |
LLU|FUN_012116-T1 | SUGAR KINASE |
LLU|FUN_012117-T1 | |
LLU|FUN_012118-T1 | SUGAR KINASE |
LLU|FUN_012119-T1 | |
LLU|FUN_012120-T1 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT |
LLU|FUN_012121-T1 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT |
LLU|FUN_012122-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_012123-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_012124-T1 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
LLU|FUN_012125-T1 | |
LLU|FUN_012126-T1 | ZGC:153157 |
LLU|FUN_012127-T1 | PROTEIN CBG11839-RELATED |
LLU|FUN_012128-T1 | NEUROTRANSMITTER GATED ION CHANNEL |