Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_012230-T1 | |
LLU|FUN_012231-T1 | |
LLU|FUN_012232-T1 | |
LLU|FUN_012233-T1 | |
LLU|FUN_012234-T1 | GLYCOSIDASE FAMILY 31 |
LLU|FUN_012235-T1 | SH3 DOMAIN-BINDING PROTEIN 5 |
LLU|FUN_012236-T1 | |
LLU|FUN_012237-T1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
LLU|FUN_012238-T1 | |
LLU|FUN_012239-T1 | |
LLU|FUN_012240-T1 | |
LLU|FUN_012241-T1 | |
LLU|FUN_012242-T1 | POLY A POLYMERASE CID PAP -RELATED |
LLU|FUN_012243-T1 | |
LLU|FUN_012244-T1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
LLU|FUN_012245-T1 | |
LLU|FUN_012246-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_012247-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_012248-T1 | POLY A POLYMERASE CID PAP -RELATED |
LLU|FUN_012249-T1 | POLY A POLYMERASE CID PAP -RELATED |
LLU|FUN_012250-T1 | THIAMIN PYROPHOSPHOKINASE |
LLU|FUN_012251-T1 | FAST LEU-RICH DOMAIN-CONTAINING |
LLU|FUN_012252-T1 | NON-SPECIFIC LETHAL 1, ISOFORM M |
LLU|FUN_012253-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 9 |
LLU|FUN_012254-T1 | TRANSCRIPTION FACTOR CP2 |
LLU|FUN_012255-T1 | |
LLU|FUN_012256-T1 | CENTROSOMAL PROTEIN OF 70 KDA |
LLU|FUN_012257-T1 | |
LLU|FUN_012258-T1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
LLU|FUN_012259-T1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
LLU|FUN_012260-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
LLU|FUN_012261-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
LLU|FUN_012262-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
LLU|FUN_012263-T1 | |
LLU|FUN_012264-T1 | |
LLU|FUN_012265-T1 | |
LLU|FUN_012266-T1 | |
LLU|FUN_012267-T1 | MIP08469P |
LLU|FUN_012268-T1 | |
LLU|FUN_012269-T1 | PATCHED-RELATED |
LLU|FUN_012270-T1 | PATCHED-RELATED |
LLU|FUN_012271-T1 | C. ELEGANS HOMEOBOX |
LLU|FUN_012272-T1 | PATCHED-RELATED |
LLU|FUN_012273-T1 | C. ELEGANS HOMEOBOX |
LLU|FUN_012274-T1 | |
LLU|FUN_012275-T1 | |
LLU|FUN_012276-T1 | |
LLU|FUN_012277-T1 | |
LLU|FUN_012278-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_012279-T1 | GLYCOSYL HYDROLASE-RELATED |