Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_001108-T1 | |
LLU|FUN_001109-T1 | |
LLU|FUN_001110-T1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
LLU|FUN_001111-T1 | |
LLU|FUN_001112-T1 | TRICHOHYALIN-RELATED |
LLU|FUN_001113-T1 | |
LLU|FUN_001114-T1 | |
LLU|FUN_001115-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
LLU|FUN_001116-T1 | |
LLU|FUN_001117-T1 | |
LLU|FUN_001118-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_001119-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_001120-T1 | |
LLU|FUN_001121-T1 | |
LLU|FUN_001122-T1 | - |
LLU|FUN_001123-T1 | BTB POZ DOMAIN CONTAINING 12 |
LLU|FUN_001124-T1 | |
LLU|FUN_001125-T1 | |
LLU|FUN_001126-T1 | FUKUTIN RELATED PROTEIN |
LLU|FUN_001127-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_001128-T1 | ATP-DEPENDENT RNA HELICASE |
LLU|FUN_001129-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_001130-T1 | ATP-DEPENDENT RNA HELICASE |
LLU|FUN_001131-T1 | OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL |
LLU|FUN_001132-T1 | PROTEIN, PUTATIVE-RELATED |
LLU|FUN_001133-T1 | |
LLU|FUN_001134-T1 | |
LLU|FUN_001135-T1 | |
LLU|FUN_001136-T1 | |
LLU|FUN_001137-T1 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
LLU|FUN_001138-T1 | |
LLU|FUN_001139-T1 | |
LLU|FUN_001140-T1 | G PROTEIN PATHWAY SUPPRESSOR 2 |
LLU|FUN_001141-T1 | |
LLU|FUN_001142-T1 | UNCHARACTERIZED |
LLU|FUN_001143-T1 | UNCHARACTERIZED |
LLU|FUN_001144-T1 | |
LLU|FUN_001145-T1 | FORKHEAD BOX PROTEIN |
LLU|FUN_001146-T1 | FORKHEAD BOX PROTEIN |
LLU|FUN_001147-T1 | C-TYPE LECTIN SUPERFAMILY MEMBER |
LLU|FUN_001148-T1 | |
LLU|FUN_001149-T1 | |
LLU|FUN_001150-T1 | |
LLU|FUN_001151-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
LLU|FUN_001152-T1 | |
LLU|FUN_001153-T1 | RIBOSOME BIOGENESIS PROTEIN NSA2 HOMOLOG |
LLU|FUN_001154-T1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
LLU|FUN_001155-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_001156-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_001157-T1 | PA14 DOMAIN-CONTAINING PROTEIN |