Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_001058-T1 | |
LLU|FUN_001059-T1 | MALEYLACETOACETATE ISOMERASE |
LLU|FUN_001060-T1 | |
LLU|FUN_001061-T1 | |
LLU|FUN_001062-T1 | SPLICING FACTOR 3B |
LLU|FUN_001063-T1 | SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR |
LLU|FUN_001064-T1 | BAND 7 PROTEIN-RELATED |
LLU|FUN_001065-T1 | |
LLU|FUN_001066-T1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
LLU|FUN_001067-T1 | |
LLU|FUN_001068-T1 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
LLU|FUN_001069-T1 | USP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_001070-T1 | USP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_001071-T1 | USP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_001072-T1 | |
LLU|FUN_001073-T1 | |
LLU|FUN_001074-T1 | USP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_001075-T1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
LLU|FUN_001076-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
LLU|FUN_001077-T1 | |
LLU|FUN_001078-T1 | TGF-BETA FAMILY |
LLU|FUN_001079-T1 | |
LLU|FUN_001080-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_001081-T1 | |
LLU|FUN_001082-T1 | |
LLU|FUN_001083-T1 | |
LLU|FUN_001084-T1 | ATILLA, ISOFORM B-RELATED-RELATED |
LLU|FUN_001085-T1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
LLU|FUN_001086-T1 | |
LLU|FUN_001087-T1 | RGD1565685 PROTEIN |
LLU|FUN_001088-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
LLU|FUN_001089-T1 | |
LLU|FUN_001090-T1 | |
LLU|FUN_001091-T1 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
LLU|FUN_001092-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
LLU|FUN_001093-T1 | |
LLU|FUN_001094-T1 | |
LLU|FUN_001095-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
LLU|FUN_001096-T1 | |
LLU|FUN_001097-T1 | |
LLU|FUN_001098-T1 | |
LLU|FUN_001099-T1 | ATP-DEPENDENT RNA HELICASE |
LLU|FUN_001100-T1 | AMINO ACID TRANSPORTER |
LLU|FUN_001101-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2 |
LLU|FUN_001102-T1 | |
LLU|FUN_001103-T1 | |
LLU|FUN_001104-T1 | DYNAMIN |
LLU|FUN_001105-T1 | |
LLU|FUN_001106-T1 | |
LLU|FUN_001107-T1 | DYNAMIN |